PDB Reading/Downloading

Download/Read input PDB via get.pdb and read.pdb function of bio3d package and filter the PDB file for only containing atoms.

Usage

read_PDB(PDB_ID, PDB_path = NULL, network_approach = "ca")

Arguments

PDB_ID

PDB ID

PDB_path

PDB file path (default = NULL)

network_approach

network building approach; "ca" (default) for using ca atoms only or "all" for using all atoms

Value

Matrix that contains all the atoms in the PDB structure